IL_5IB8_336

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_336 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0602

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

5IB8|1|1H|U|2847
5IB8|1|1H|G|2848
5IB8|1|1H|U|2849
5IB8|1|1H|A|2850
5IB8|1|1H|A|2851
5IB8|1|1H|G|2852
*
5IB8|1|1H|U|2865
5IB8|1|1H|U|2866
5IB8|1|1H|G|2867
5IB8|1|1H|A|2868
5IB8|1|1H|G|2869

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19