IL_5IB8_348

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5IB8|1|14|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IB8_348 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1401

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5IB8|1|14|C|844
5IB8|1|14|G|845
5IB8|1|14|C|846
5IB8|1|14|U|847
5IB8|1|14|G|848
5IB8|1|14|A|849
5IB8|1|14|C|850
*
5IB8|1|14|G|928
5IB8|1|14|G|929
5IB8|1|14|U|930
5IB8|1|14|G|931
5IB8|1|14|G|932
5IB8|1|14|A|933
5IB8|1|14|G|934

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain H5

50S ribosomal protein L30