IL_5IBB_102

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5IBB|1|14|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_102 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.104

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5IBB|1|14|C|1208
5IBB|1|14|G|1209
5IBB|1|14|A|1210
5IBB|1|14|U|1211
5IBB|1|14|G|1212
5IBB|1|14|A|1213
5IBB|1|14|A|1214
5IBB|1|14|G|1215
*
5IBB|1|14|U|1234
5IBB|1|14|G|1235
5IBB|1|14|G|1236
5IBB|1|14|A|1237
5IBB|1|14|G|1238

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20