IL_5IBB_112

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

5IBB|1|14|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_112 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0814

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5IBB|1|14|C|1437
5IBB|1|14|U|1438
5IBB|1|14|A|1439
5IBB|1|14|G|1440
*
5IBB|1|14|C|1551
5IBB|1|14|G|1552
5IBB|1|14|A|1553
5IBB|1|14|A|1554
5IBB|1|14|G|1555

Current chains

Chain 14

23S ribosomal RNA

Nearby chains