IL_5IBB_129

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_129 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1394

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

5IBB|1|14|U|1851
5IBB|1|14|C|1852
5IBB|1|14|A|1853
5IBB|1|14|A|1854
5IBB|1|14|G|1855
*
5IBB|1|14|C|1887
5IBB|1|14|G|1888
5IBB|1|14|A|1889
5IBB|1|14|A|1890
5IBB|1|14|G|1891

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 3L

Transfer RNA; tRNA

Chain F5

50S ribosomal protein L28