IL_5IBB_132

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5IBB|1|14|A|1938, 5IBB|1|14|U|1944, 5IBB|1|14|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_132 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1156

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

5IBB|1|14|C|1934
5IBB|1|14|G|1935
5IBB|1|14|A|1936
5IBB|1|14|A|1937
5IBB|1|14|A|1938
5IBB|1|14|U|1939
5IBB|1|14|U|1940
5IBB|1|14|C|1941
5IBB|1|14|C|1942
5IBB|1|14|U|1943
5IBB|1|14|U|1944
5IBB|1|14|G|1945
*
5IBB|1|14|C|1961
5IBB|1|14|C|1962
5IBB|1|14|U|1963
5IBB|1|14|G|1964

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 1L

Transfer RNA; tRNA