IL_5IBB_157

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5IBB|1|14|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_157 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0722

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5IBB|1|14|U|2636
5IBB|1|14|U|2637
5IBB|1|14|G|2638
5IBB|1|14|A|2639
5IBB|1|14|G|2640
*
5IBB|1|14|C|2774
5IBB|1|14|A|2775
5IBB|1|14|A|2776
5IBB|1|14|G|2777
5IBB|1|14|A|2778
5IBB|1|14|U|2779
5IBB|1|14|G|2780
5IBB|1|14|A|2781
5IBB|1|14|G|2782

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 29

50S ribosomal protein L3