IL_5IBB_243

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

5IBB|1|1H|U|504, 5IBB|1|1H|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_243 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0498

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

5IBB|1|1H|G|481
5IBB|1|1H|A|482
5IBB|1|1H|A|483
5IBB|1|1H|C|484
*
5IBB|1|1H|G|496
5IBB|1|1H|A|497
5IBB|1|1H|G|498
5IBB|1|1H|U|499
5IBB|1|1H|G|500
5IBB|1|1H|A|501
5IBB|1|1H|A|502
5IBB|1|1H|A|503
5IBB|1|1H|U|504
5IBB|1|1H|A|505
5IBB|1|1H|G|506
5IBB|1|1H|A|507
5IBB|1|1H|G|508
5IBB|1|1H|C|509

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain E8

50S ribosomal protein L22

Chain G8

50S ribosomal protein L24