IL_5IBB_277

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5IBB|1|1H|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_277 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0509

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5IBB|1|1H|C|1351
5IBB|1|1H|U|1352
5IBB|1|1H|A|1353
5IBB|1|1H|A|1354
5IBB|1|1H|G|1355
*
5IBB|1|1H|C|1376
5IBB|1|1H|G|1377
5IBB|1|1H|A|1378
5IBB|1|1H|A|1379
5IBB|1|1H|G|1380

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain P8

50S ribosomal protein L34