IL_5IBB_359

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5IBB|1|1H|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IBB_359 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1261

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5IBB|1|1H|C|844
5IBB|1|1H|G|845
5IBB|1|1H|C|846
5IBB|1|1H|U|847
5IBB|1|1H|G|848
5IBB|1|1H|A|849
5IBB|1|1H|C|850
*
5IBB|1|1H|G|928
5IBB|1|1H|G|929
5IBB|1|1H|U|930
5IBB|1|1H|G|931
5IBB|1|1H|G|932
5IBB|1|1H|A|933
5IBB|1|1H|G|934

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain L8

50S ribosomal protein L30