IL_5IEM_034

3D structure

PDB id

5IEM (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the 5'-terminal hairpin of the 7SK snRNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CC*GCUG

Length

6 nucleotides

Bulged bases

5IEM|9|A|U|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IEM_034 not in the Motif Atlas

Geometric match to IL_5J7L_044

Geometric discrepancy: 0.3406

The information below is about IL_5J7L_044

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

5IEM|9|A|C|13
5IEM|9|A|C|14
*
5IEM|9|A|G|40
5IEM|9|A|C|41
5IEM|9|A|U|42
5IEM|9|A|G|43

Current chains

Chain A

7SK snRNA

Nearby chains