IL_5IMQ_017

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_017 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.2409

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5IMQ|1|A|G|446
5IMQ|1|A|G|447
5IMQ|1|A|A|448
5IMQ|1|A|C|449
5IMQ|1|A|G|450
*
5IMQ|1|A|C|483
5IMQ|1|A|G|484
5IMQ|1|A|G|485
5IMQ|1|A|U|486
5IMQ|1|A|A|487
5IMQ|1|A|C|488

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

30S ribosomal protein S4

Chain T

30S ribosomal protein S16