IL_5IMQ_020
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_020 not in the Motif Atlas
- Homologous match to IL_6CZR_135
- Geometric discrepancy: 0.1945
- The information below is about IL_6CZR_135
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
5IMQ|1|A|U|580
5IMQ|1|A|G|581
5IMQ|1|A|U|582
5IMQ|1|A|A|583
5IMQ|1|A|G|584
*
5IMQ|1|A|U|757
5IMQ|1|A|G|758
5IMQ|1|A|A|759
5IMQ|1|A|G|760
5IMQ|1|A|G|761
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 30S ribosomal protein S12
- Chain S
- 30S ribosomal protein S15
- Chain U
- 30S ribosomal protein S17
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