IL_5IMQ_066
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAGC
- Length
- 18 nucleotides
- Bulged bases
- 5IMQ|1|D|U|504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_066 not in the Motif Atlas
- Geometric match to IL_7RQB_014
- Geometric discrepancy: 0.1677
- The information below is about IL_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.6
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
5IMQ|1|D|G|481
5IMQ|1|D|A|482
5IMQ|1|D|A|483
5IMQ|1|D|C|484
*
5IMQ|1|D|G|496
5IMQ|1|D|A|497
5IMQ|1|D|G|498
5IMQ|1|D|U|499
5IMQ|1|D|G|500
5IMQ|1|D|A|501
5IMQ|1|D|A|502
5IMQ|1|D|A|503
5IMQ|1|D|U|504
5IMQ|1|D|A|505
5IMQ|1|D|G|506
5IMQ|1|D|A|507
5IMQ|1|D|G|508
5IMQ|1|D|C|509
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain o
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L23
- Chain q
- 50S ribosomal protein L24
Coloring options: