IL_5IMQ_071
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAAG*UGGAGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_071 not in the Motif Atlas
- Homologous match to IL_5J7L_263
- Geometric discrepancy: 0.3444
- The information below is about IL_5J7L_263
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
5IMQ|1|D|U|703
5IMQ|1|D|G|704
5IMQ|1|D|A|705
5IMQ|1|D|A|706
5IMQ|1|D|G|707
*
5IMQ|1|D|U|724
5IMQ|1|D|G|725
5IMQ|1|D|G|726
5IMQ|1|D|A|727
5IMQ|1|D|G|728
5IMQ|1|D|G|729
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain a
- 50S ribosomal protein L2
Coloring options: