IL_5IMQ_078
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCACUG*CAAAC
- Length
- 11 nucleotides
- Bulged bases
- 5IMQ|1|D|A|910, 5IMQ|1|D|A|911
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_078 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.381
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5IMQ|1|D|G|864
5IMQ|1|D|C|865
5IMQ|1|D|A|866
5IMQ|1|D|C|867
5IMQ|1|D|U|868
5IMQ|1|D|G|869
*
5IMQ|1|D|C|908
5IMQ|1|D|A|909
5IMQ|1|D|A|910
5IMQ|1|D|A|911
5IMQ|1|D|C|912
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain i
- 50S ribosomal protein L16
- Chain r
- 50S ribosomal protein L25
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