IL_5IMQ_089
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 5IMQ|1|D|U|1211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_089 not in the Motif Atlas
- Homologous match to IL_7A0S_043
- Geometric discrepancy: 0.214
- The information below is about IL_7A0S_043
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
5IMQ|1|D|C|1208
5IMQ|1|D|G|1209
5IMQ|1|D|A|1210
5IMQ|1|D|U|1211
5IMQ|1|D|G|1212
5IMQ|1|D|A|1213
5IMQ|1|D|A|1214
5IMQ|1|D|G|1215
*
5IMQ|1|D|U|1234
5IMQ|1|D|G|1235
5IMQ|1|D|G|1236
5IMQ|1|D|A|1237
5IMQ|1|D|G|1238
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain m
- 50S ribosomal protein L20
Coloring options: