IL_5IMQ_092

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

5IMQ|1|D|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_092 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1998

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

5IMQ|1|D|G|1319
5IMQ|1|D|C|1320
5IMQ|1|D|A|1321
5IMQ|1|D|A|1322
5IMQ|1|D|U|1323
*
5IMQ|1|D|A|1331
5IMQ|1|D|G|1332
5IMQ|1|D|C|1333

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain o

50S ribosomal protein L22

Chain p

50S ribosomal protein L23