IL_5IMQ_103

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*CCCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_103 not in the Motif Atlas

Geometric match to IL_6ZDU_001

Geometric discrepancy: 0.3828

The information below is about IL_6ZDU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

5IMQ|1|D|G|1717
5IMQ|1|D|G|1718
5IMQ|1|D|G|1725
*
5IMQ|1|D|C|1734
5IMQ|1|D|C|1735
5IMQ|1|D|C|1741
5IMQ|1|D|C|1742

Current chains

Chain D

23S ribosomal RNA

Nearby chains