Motif IL_99358.1 Version IL_99358.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6VMY_001 | 6VMY | 0.6093 | 0 | A | Cobalamin riboswitch | U | 219 | C | 220 | C | 221 | G | 222 | * | C | 230 | A | 231 | G | 232 | cWW | ntWH | cWW | |||
| 2 | IL_7MLW_007 | 7MLW | 0.7425 | 1 | F | Guanidine-I riboswitch | G | 89 | A | 90 | A | 91 | A | 92 | * | U | 73 | G | 75 | C | 76 | cWW | cWW | cWW | |||
| 3 | IL_4PHY_003 | 4PHY | 0.6509 | 1 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | * | G | 31 | A | 33 | C | 34 | cWW | cWw | ncWW | |||
| 4 | IL_6ZDU_001 | 6ZDU | 0.4792 | 0 | C | Chains: C,D | A | 1283 | U | 1284 | A | 1285 | G | 1286 | * | C | 1268 | U | 1269 | U | 1270 | ncWW | cWW | ||||
| 5 | IL_7KJT_002 | 7KJT | 0.3625 | 0 | A | tRNA | C | 39 | C | 40 | A | 41 | G | 42 | * | C | 28 | U | 29 | G | 30 | ncWW | cWW | ||||
| 6 | IL_8CRE_417 | 8CRE | 0.3514 | 0 | CM | SSU rRNA | G | 495 | G | 496 | U | 497 | C | 498 | * | G | 485 | G | 486 | C | 487 | cWW | ncWw | ncSW | cWW | ||
| 7 | IL_4N0T_004 | 4N0T | 0.0000 | 0 | B | U6 snRNA | G | 78 | A | 79 | U | 80 | G | 81 | * | C | 66 | C | 67 | C | 68 | cWW | ncWW | cWW | cWW | ||
| 8 | IL_4QIK_001 | 4QIK | 0.4164 | 0 | D+C | RNA (23-mer) | U | 11 | G | 12 | U | 13 | G | 14 | * | C | 10 | U | 11 | G | 12 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCG*CAG | 1 |
| GAAA*UCGC | 1 |
| GAUC*GAAC | 1 |
| AUAG*CUU | 1 |
| CCAG*CUG | 1 |
| GGUC*GGC | 1 |
| GAUG*CCC | 1 |
| UGUG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CC*A | 1 |
| AA*CG | 1 |
| AU*AA | 1 |
| UA*U | 1 |
| CA*U | 1 |
| GU*G | 1 |
| AU*C | 1 |
| GU*U | 1 |
- Annotations
-
- (8)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.35 | Avg 0.54 | Max 0.89
Coloring options: