IL_5IMQ_114

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

5IMQ|1|D|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_114 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.164

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5IMQ|1|D|C|2081
5IMQ|1|D|A|2082
5IMQ|1|D|G|2083
*
5IMQ|1|D|C|2236
5IMQ|1|D|G|2237
5IMQ|1|D|G|2238
5IMQ|1|D|G|2239

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L31