IL_5IMQ_136
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGU*GCAUAAG
- Length
- 11 nucleotides
- Bulged bases
- 5IMQ|1|D|U|2712, 5IMQ|1|D|A|2712|||A, 5IMQ|1|D|A|2713
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_136 not in the Motif Atlas
- Geometric match to IL_4K27_002
- Geometric discrepancy: 0.3516
- The information below is about IL_4K27_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
5IMQ|1|D|C|2695
5IMQ|1|D|U|2696
5IMQ|1|D|G|2697
5IMQ|1|D|U|2698
*
5IMQ|1|D|G|2709
5IMQ|1|D|C|2710
5IMQ|1|D|A|2711
5IMQ|1|D|U|2712
5IMQ|1|D|A|2712|||A
5IMQ|1|D|A|2713
5IMQ|1|D|G|2714
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain j
- 50S ribosomal protein L17
Coloring options: