IL_5IMQ_152

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_152 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.3691

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5IMQ|1|A|G|450
5IMQ|1|A|A|451
5IMQ|1|A|A|452
5IMQ|1|A|A|453
5IMQ|1|A|C|454
5IMQ|1|A|C|455
*
5IMQ|1|A|G|477
5IMQ|1|A|A|478
5IMQ|1|A|C|479
5IMQ|1|A|U|480
5IMQ|1|A|G|481
5IMQ|1|A|A|482
5IMQ|1|A|C|483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S16