IL_5IMQ_156

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGG*UUG

Length

7 nucleotides

Bulged bases

5IMQ|1|A|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_156 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.2724

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

5IMQ|1|A|C|924
5IMQ|1|A|G|925
5IMQ|1|A|G|926
5IMQ|1|A|G|927
*
5IMQ|1|A|U|1390
5IMQ|1|A|U|1391
5IMQ|1|A|G|1392

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S5