IL_5IMQ_159
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUGG*CUGGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_159 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3006
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
5IMQ|1|A|C|1412
5IMQ|1|A|A|1413
5IMQ|1|A|U|1414
5IMQ|1|A|G|1415
5IMQ|1|A|G|1416
*
5IMQ|1|A|C|1484
5IMQ|1|A|U|1485
5IMQ|1|A|G|1486
5IMQ|1|A|G|1487
5IMQ|1|A|G|1488
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 30S ribosomal protein S12
Coloring options: