IL_5IMQ_163

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5IMQ|1|D|G|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_163 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.3825

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5IMQ|1|D|C|844
5IMQ|1|D|G|845
5IMQ|1|D|C|846
5IMQ|1|D|U|847
5IMQ|1|D|G|848
5IMQ|1|D|A|849
5IMQ|1|D|C|850
*
5IMQ|1|D|G|928
5IMQ|1|D|G|929
5IMQ|1|D|U|930
5IMQ|1|D|G|931
5IMQ|1|D|G|932
5IMQ|1|D|A|933
5IMQ|1|D|G|934

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain u

50S ribosomal protein L30