IL_5IMQ_164
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_164 not in the Motif Atlas
- Homologous match to IL_7A0S_111
- Geometric discrepancy: 0.4794
- The information below is about IL_7A0S_111
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.5
- Basepair signature
- cWW-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5IMQ|1|D|U|858
5IMQ|1|D|G|859
5IMQ|1|D|U|860
5IMQ|1|D|A|861
5IMQ|1|D|G|862
*
5IMQ|1|D|C|915
5IMQ|1|D|G|916
5IMQ|1|D|A|917
5IMQ|1|D|A|918
5IMQ|1|D|G|919
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain i
- 50S ribosomal protein L16
- Chain r
- 50S ribosomal protein L25
- Chain s
- 50S ribosomal protein L27
- Chain u
- 50S ribosomal protein L30
Coloring options: