IL_5IMQ_183
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5IMQ|1|A|A|532, 5IMQ|1|A|U|534, 5IMQ|1|A|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_183 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.2514
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5IMQ|1|A|G|515
5IMQ|1|A|U|516
5IMQ|1|A|G|517
5IMQ|1|A|C|518
5IMQ|1|A|C|519
5IMQ|1|A|A|520
5IMQ|1|A|G|521
*
5IMQ|1|A|C|528
5IMQ|1|A|G|529
5IMQ|1|A|G|530
5IMQ|1|A|U|531
5IMQ|1|A|A|532
5IMQ|1|A|A|533
5IMQ|1|A|U|534
5IMQ|1|A|A|535
5IMQ|1|A|C|536
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S3
- Chain H
- 30S ribosomal protein S4
- Chain P
- 30S ribosomal protein S12
Coloring options: