IL_5IMQ_194
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMQ_194 not in the Motif Atlas
- Homologous match to IL_9DFE_007
- Geometric discrepancy: 0.152
- The information below is about IL_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
5IMQ|1|D|U|239
5IMQ|1|D|G|240
5IMQ|1|D|A|241
5IMQ|1|D|G|242
5IMQ|1|D|U|243
5IMQ|1|D|A|244
5IMQ|1|D|G|245
*
5IMQ|1|D|C|253
5IMQ|1|D|G|254
5IMQ|1|D|A|255
5IMQ|1|D|A|256
5IMQ|1|D|A|257
5IMQ|1|D|G|258
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain h
- 50S ribosomal protein L15
- Chain z
- 50S ribosomal protein L35
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