3D structure

PDB id
9DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
UGAGUAG*CGAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_48283.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
14

Unit IDs

9DFE|1|1A|U|239
9DFE|1|1A|G|240
9DFE|1|1A|A|241
9DFE|1|1A|G|242
9DFE|1|1A|U|243
9DFE|1|1A|A|244
9DFE|1|1A|G|245
*
9DFE|1|1A|C|253
9DFE|1|1A|G|254
9DFE|1|1A|A|255
9DFE|1|1A|A|256
9DFE|1|1A|A|257
9DFE|1|1A|G|258

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 18
50S ribosomal protein L35
Chain 1P
50S ribosomal protein L15

Coloring options:

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