IL_5IMQ_197

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMQ_197 not in the Motif Atlas

Homologous match to IL_9DFE_028

Geometric discrepancy: 0.2689

The information below is about IL_9DFE_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5IMQ|1|D|G|864
5IMQ|1|D|C|865
5IMQ|1|D|A|866
5IMQ|1|D|C|867
5IMQ|1|D|U|868
*
5IMQ|1|D|A|909
5IMQ|1|D|A|910
5IMQ|1|D|A|911
5IMQ|1|D|C|912

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain i

50S ribosomal protein L16

Chain r

50S ribosomal protein L25