IL_5IMR_015

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

5IMR|1|A|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_015 not in the Motif Atlas

Geometric match to IL_2OIU_003

Geometric discrepancy: 0.3062

The information below is about IL_2OIU_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5IMR|1|A|U|367
5IMR|1|A|U|368
5IMR|1|A|C|369
*
5IMR|1|A|G|392
5IMR|1|A|A|393

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Elongation factor 4

Chain T

30S ribosomal protein S16