IL_5IMR_019

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_019 not in the Motif Atlas

Homologous match to IL_6CZR_131

Geometric discrepancy: 0.3343

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5IMR|1|A|G|450
5IMR|1|A|A|451
5IMR|1|A|A|452
5IMR|1|A|A|453
5IMR|1|A|C|454
5IMR|1|A|C|455
5IMR|1|A|C|456
*
5IMR|1|A|G|476
5IMR|1|A|G|477
5IMR|1|A|A|478
5IMR|1|A|C|479
5IMR|1|A|U|480
5IMR|1|A|G|481
5IMR|1|A|A|482
5IMR|1|A|C|483

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S16