3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
CGUGCCAG*CGGUAAUACG
Length
18 nucleotides
Bulged bases
5IMR|1|A|A|532, 5IMR|1|A|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5IMR|1|A|C|514
5IMR|1|A|G|515
5IMR|1|A|U|516
5IMR|1|A|G|517
5IMR|1|A|C|518
5IMR|1|A|C|519
5IMR|1|A|A|520
5IMR|1|A|G|521
*
5IMR|1|A|C|528
5IMR|1|A|G|529
5IMR|1|A|G|530
5IMR|1|A|U|531
5IMR|1|A|A|532
5IMR|1|A|A|533
5IMR|1|A|U|534
5IMR|1|A|A|535
5IMR|1|A|C|536
5IMR|1|A|G|537

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S3
Chain H
30S ribosomal protein S4
Chain P
30S ribosomal protein S12

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1903 s