IL_5IMR_048

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCCACC*GGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_048 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.392

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5IMR|1|A|G|1258
5IMR|1|A|C|1259
5IMR|1|A|C|1260
5IMR|1|A|A|1261
5IMR|1|A|C|1262
5IMR|1|A|C|1263
*
5IMR|1|A|G|1272
5IMR|1|A|G|1273
5IMR|1|A|G|1274
5IMR|1|A|A|1275
5IMR|1|A|G|1276
5IMR|1|A|C|1277

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S3

Chain N

30S ribosomal protein S10

Chain Y

30S ribosomal protein Thx