IL_5IMR_057

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAACUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_057 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.2515

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5IMR|1|D|G|188
5IMR|1|D|G|189
5IMR|1|D|A|190
5IMR|1|D|A|191
5IMR|1|D|C|192
5IMR|1|D|U|193
5IMR|1|D|G|194
*
5IMR|1|D|C|201
5IMR|1|D|U|202
5IMR|1|D|C|203
5IMR|1|D|A|204
5IMR|1|D|G|205
5IMR|1|D|U|206
5IMR|1|D|A|207
5IMR|1|D|C|208

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L15

Chain v

50S ribosomal protein L31

Chain y

50S ribosomal protein L34