IL_5IMR_076

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGG,CCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_076 not in the Motif Atlas

Geometric match to IL_1KFO_002

Geometric discrepancy: 0.1985

The information below is about IL_1KFO_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5IMR|1|D|G|1015
5IMR|1|D|G|1016
5IMR|1|D|G|1017
*
5IMR|1|D|C|1145
5IMR|1|D|C|1146
5IMR|1|D|C|1147

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA