IL_5IMR_077

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GCUAAGUGGUAAAG*CGAAAAUGAUGCGGGGCUUAAGC

Length

37 nucleotides

Bulged bases

5IMR|1|D|A|1020, 5IMR|1|D|U|1026, 5IMR|1|D|A|1127, 5IMR|1|D|U|1130, 5IMR|1|D|U|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|G|1017
5IMR|1|D|C|1018
5IMR|1|D|U|1019
5IMR|1|D|A|1020
5IMR|1|D|A|1021
5IMR|1|D|G|1022
5IMR|1|D|U|1023
5IMR|1|D|G|1024
5IMR|1|D|G|1025
5IMR|1|D|U|1026
5IMR|1|D|A|1027
5IMR|1|D|A|1028
5IMR|1|D|A|1029
5IMR|1|D|G|1030
*
5IMR|1|D|C|1124
5IMR|1|D|G|1125
5IMR|1|D|A|1126
5IMR|1|D|A|1127
5IMR|1|D|A|1128
5IMR|1|D|A|1129
5IMR|1|D|U|1130
5IMR|1|D|G|1131
5IMR|1|D|A|1132
5IMR|1|D|U|1133
5IMR|1|D|G|1134
5IMR|1|D|C|1135
5IMR|1|D|G|1136
5IMR|1|D|G|1137
5IMR|1|D|G|1138
5IMR|1|D|G|1139
5IMR|1|D|C|1140
5IMR|1|D|U|1141
5IMR|1|D|U|1142
5IMR|1|D|A|1142|||A
5IMR|1|D|A|1143
5IMR|1|D|G|1144
5IMR|1|D|C|1145

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain E

5S ribosomal RNA; 5S rRNA

Chain b

50S ribosomal protein L3

Chain e

50S ribosomal protein L6

Chain f

50S ribosomal protein L13

Chain i

50S ribosomal protein L16