IL_5IMR_106

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5IMR|1|D|A|1938, 5IMR|1|D|U|1944, 5IMR|1|D|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_106 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.3258

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5IMR|1|D|C|1934
5IMR|1|D|G|1935
5IMR|1|D|A|1936
5IMR|1|D|A|1937
5IMR|1|D|A|1938
5IMR|1|D|U|1939
5IMR|1|D|U|1940
5IMR|1|D|C|1941
5IMR|1|D|C|1942
5IMR|1|D|U|1943
5IMR|1|D|U|1944
5IMR|1|D|G|1945
*
5IMR|1|D|C|1961
5IMR|1|D|C|1962
5IMR|1|D|U|1963
5IMR|1|D|G|1964

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain C

Elongation factor 4