3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
UGGGAGC*GCGCCGGUGAAAUACCA
Length
24 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5IMR|1|D|U|2122
5IMR|1|D|G|2123
5IMR|1|D|G|2124
5IMR|1|D|G|2125
5IMR|1|D|A|2126
5IMR|1|D|G|2127
5IMR|1|D|C|2128
*
5IMR|1|D|G|2160
5IMR|1|D|C|2161
5IMR|1|D|G|2162
5IMR|1|D|C|2163
5IMR|1|D|C|2164
5IMR|1|D|G|2165
5IMR|1|D|G|2166
5IMR|1|D|U|2167
5IMR|1|D|G|2168
5IMR|1|D|A|2169
5IMR|1|D|A|2170
5IMR|1|D|A|2171
5IMR|1|D|U|2172
5IMR|1|D|A|2173
5IMR|1|D|C|2174
5IMR|1|D|C|2175
5IMR|1|D|A|2176

Current chains

Chain D
23S ribosomal RNA

Nearby chains

Chain 5
Transfer RNA; tRNA
Chain Z
50S ribosomal protein L1

Coloring options:

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