IL_5IMR_120

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCGAGC*GCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_120 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.366

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5IMR|1|D|C|2466
5IMR|1|D|C|2467
5IMR|1|D|G|2468
5IMR|1|D|A|2469
5IMR|1|D|G|2470
5IMR|1|D|C|2471
*
5IMR|1|D|G|2479
5IMR|1|D|C|2480
5IMR|1|D|G|2481
5IMR|1|D|G|2482
5IMR|1|D|C|2483
5IMR|1|D|G|2484

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain C

Elongation factor 4

Chain i

50S ribosomal protein L16