IL_5IMR_129

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CU*AUAAG

Length

7 nucleotides

Bulged bases

5IMR|1|D|A|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_129 not in the Motif Atlas

Homologous match to IL_7RQB_106

Geometric discrepancy: 0.2282

The information below is about IL_7RQB_106

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5IMR|1|D|C|2695
5IMR|1|D|U|2696
*
5IMR|1|D|A|2711
5IMR|1|D|U|2712
5IMR|1|D|A|2712|||A
5IMR|1|D|A|2713
5IMR|1|D|G|2714

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L17

Chain l

50S ribosomal protein L19