3D structure

PDB id
5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
5.7 Å

Loop

Sequence
GAUAAC*GGAAGC
Length
12 nucleotides
Bulged bases
5IMR|1|D|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5IMR_130 not in the Motif Atlas
Homologous match to IL_7RQB_107
Geometric discrepancy: 0.234
The information below is about IL_7RQB_107
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.5
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
5

Unit IDs

5IMR|1|D|G|2737
5IMR|1|D|A|2738
5IMR|1|D|U|2739
5IMR|1|D|A|2740
5IMR|1|D|A|2741
5IMR|1|D|C|2742
*
5IMR|1|D|G|2762
5IMR|1|D|G|2763
5IMR|1|D|A|2764
5IMR|1|D|A|2765
5IMR|1|D|G|2766
5IMR|1|D|C|2767

Current chains

Chain D
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L36
Chain e
50S ribosomal protein L6
Chain f
50S ribosomal protein L13

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