IL_5IMR_130
3D structure
- PDB id
- 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 5.7 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 5IMR|1|D|A|2765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5IMR_130 not in the Motif Atlas
- Homologous match to IL_7RQB_107
- Geometric discrepancy: 0.234
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5IMR|1|D|G|2737
5IMR|1|D|A|2738
5IMR|1|D|U|2739
5IMR|1|D|A|2740
5IMR|1|D|A|2741
5IMR|1|D|C|2742
*
5IMR|1|D|G|2762
5IMR|1|D|G|2763
5IMR|1|D|A|2764
5IMR|1|D|A|2765
5IMR|1|D|G|2766
5IMR|1|D|C|2767
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L36
- Chain e
- 50S ribosomal protein L6
- Chain f
- 50S ribosomal protein L13
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