IL_5IMR_137

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUUCCC*GAACAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_137 not in the Motif Atlas

Geometric match to IL_7A0S_105

Geometric discrepancy: 0.3411

The information below is about IL_7A0S_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

5IMR|1|E|G|33
5IMR|1|E|U|34
5IMR|1|E|U|35
5IMR|1|E|C|36
5IMR|1|E|C|37
5IMR|1|E|C|38
*
5IMR|1|E|G|44
5IMR|1|E|A|45
5IMR|1|E|A|46
5IMR|1|E|C|47
5IMR|1|E|A|48
5IMR|1|E|C|49

Current chains

Chain E

5S ribosomal RNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain d

50S ribosomal protein L5

Chain k

50S ribosomal protein L18