IL_5IMR_150

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CCGCCCGUCACGCCAUGG*CUGGGGCGAAGUCGUAACAAG

Length

39 nucleotides

Bulged bases

5IMR|1|A|C|1400, 5IMR|1|A|U|1498, 5IMR|1|A|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|A|C|1399
5IMR|1|A|C|1400
5IMR|1|A|G|1401
5IMR|1|A|C|1402
5IMR|1|A|C|1403
5IMR|1|A|C|1404
5IMR|1|A|G|1405
5IMR|1|A|U|1406
5IMR|1|A|C|1407
5IMR|1|A|A|1408
5IMR|1|A|C|1409
5IMR|1|A|G|1410
5IMR|1|A|C|1411
5IMR|1|A|C|1412
5IMR|1|A|A|1413
5IMR|1|A|U|1414
5IMR|1|A|G|1415
5IMR|1|A|G|1416
*
5IMR|1|A|C|1484
5IMR|1|A|U|1485
5IMR|1|A|G|1486
5IMR|1|A|G|1487
5IMR|1|A|G|1488
5IMR|1|A|G|1489
5IMR|1|A|C|1490
5IMR|1|A|G|1491
5IMR|1|A|A|1492
5IMR|1|A|A|1493
5IMR|1|A|G|1494
5IMR|1|A|U|1495
5IMR|1|A|C|1496
5IMR|1|A|G|1497
5IMR|1|A|U|1498
5IMR|1|A|A|1499
5IMR|1|A|A|1500
5IMR|1|A|C|1501
5IMR|1|A|A|1502
5IMR|1|A|A|1503
5IMR|1|A|G|1504

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain I

30S ribosomal protein S5

Chain P

30S ribosomal protein S12