IL_5IMR_162

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGGCGCCGCGAAGACAGCC*GUCGAGUGGCGCCG

Length

33 nucleotides

Bulged bases

5IMR|1|D|G|1044, 5IMR|1|D|A|1046, 5IMR|1|D|A|1111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|U|1035
5IMR|1|D|G|1036
5IMR|1|D|G|1037
5IMR|1|D|C|1038
5IMR|1|D|G|1039
5IMR|1|D|C|1040
5IMR|1|D|C|1041
5IMR|1|D|G|1042
5IMR|1|D|C|1043
5IMR|1|D|G|1044
5IMR|1|D|A|1045
5IMR|1|D|A|1046
5IMR|1|D|G|1047
5IMR|1|D|A|1048
5IMR|1|D|C|1049
5IMR|1|D|A|1050
5IMR|1|D|G|1051
5IMR|1|D|C|1052
5IMR|1|D|C|1053
*
5IMR|1|D|G|1107
5IMR|1|D|U|1108
5IMR|1|D|C|1109
5IMR|1|D|G|1110
5IMR|1|D|A|1111
5IMR|1|D|G|1112
5IMR|1|D|U|1113
5IMR|1|D|G|1114
5IMR|1|D|G|1115
5IMR|1|D|C|1116
5IMR|1|D|G|1117
5IMR|1|D|C|1118
5IMR|1|D|C|1119
5IMR|1|D|G|1120

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L36

Chain 2

50S ribosomal protein L10

Chain e

50S ribosomal protein L6

Chain i

50S ribosomal protein L16

Chain r

50S ribosomal protein L25