IL_5IMR_165

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUGCGAUGGGGGGACG*CCAAGAAAAGCCUCUAAGCACAAC

Length

40 nucleotides

Bulged bases

5IMR|1|D|U|1415, 5IMR|1|D|U|1420, 5IMR|1|D|A|1566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|G|1414
5IMR|1|D|U|1415
5IMR|1|D|G|1416
5IMR|1|D|C|1417
5IMR|1|D|G|1418
5IMR|1|D|A|1419
5IMR|1|D|U|1420
5IMR|1|D|G|1421
5IMR|1|D|G|1422
5IMR|1|D|G|1423
5IMR|1|D|G|1424
5IMR|1|D|G|1425
5IMR|1|D|G|1426
5IMR|1|D|A|1427
5IMR|1|D|C|1428
5IMR|1|D|G|1429
*
5IMR|1|D|C|1564
5IMR|1|D|C|1565
5IMR|1|D|A|1566
5IMR|1|D|A|1567
5IMR|1|D|G|1568
5IMR|1|D|A|1569
5IMR|1|D|A|1570
5IMR|1|D|A|1571
5IMR|1|D|A|1572
5IMR|1|D|G|1573
5IMR|1|D|C|1574
5IMR|1|D|C|1575
5IMR|1|D|U|1576
5IMR|1|D|C|1577
5IMR|1|D|U|1578
5IMR|1|D|A|1579
5IMR|1|D|A|1580
5IMR|1|D|G|1581
5IMR|1|D|C|1582
5IMR|1|D|A|1583
5IMR|1|D|C|1585
5IMR|1|D|A|1586
5IMR|1|D|A|1587
5IMR|1|D|C|1588

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2