IL_5IMR_169

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGCAG*CGGGCA

Length

11 nucleotides

Bulged bases

5IMR|1|D|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5IMR_169 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3512

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5IMR|1|D|U|2079
5IMR|1|D|G|2080
5IMR|1|D|C|2081
5IMR|1|D|A|2082
5IMR|1|D|G|2083
*
5IMR|1|D|C|2236
5IMR|1|D|G|2237
5IMR|1|D|G|2238
5IMR|1|D|G|2239
5IMR|1|D|C|2240
5IMR|1|D|A|2241

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain v

50S ribosomal protein L31