IL_5IMR_172

3D structure

PDB id

5IMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 5.7 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAGGC*GCCGGAG

Length

12 nucleotides

Bulged bases

5IMR|1|D|G|2319, 5IMR|1|D|A|2320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMR|1|D|C|2297
5IMR|1|D|A|2298
5IMR|1|D|G|2299
5IMR|1|D|G|2300
5IMR|1|D|C|2301
*
5IMR|1|D|G|2315
5IMR|1|D|C|2316
5IMR|1|D|C|2317
5IMR|1|D|G|2318
5IMR|1|D|G|2319
5IMR|1|D|A|2320
5IMR|1|D|G|2321

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain d

50S ribosomal protein L5

Chain k

50S ribosomal protein L18

Chain s

50S ribosomal protein L27