Loop IL_5IMR

3D structure

PDB id: 5IMR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of ribosome bound to cofactor at 5.7 angstrom resolution
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.7 Å

Loop

Sequence: CGAGCUUAAGCCGUUGAGGCGGAGGCGUAG*CGAGUCCGAACAGGGCGCAAAG
Length: 52 nucleotides
Bulged bases: 5IMR|1|D|U|613, 5IMR|1|D|U|614, 5IMR|1|D|A|616, 5IMR|1|D|A|644, 5IMR|1|D|C|645, 5IMR|1|D|C|652, 5IMR|1|D|A|653, 5IMR|1|D|A|654
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5IMR|1|D|C|601
5IMR|1|D|G|602
5IMR|1|D|A|603
5IMR|1|D|G|604
5IMR|1|D|C|605
5IMR|1|D|U|606
5IMR|1|D|U|607
5IMR|1|D|A|608
5IMR|1|D|A|609
5IMR|1|D|G|609|||A
5IMR|1|D|C|610
5IMR|1|D|C|611
5IMR|1|D|G|612
5IMR|1|D|U|613
5IMR|1|D|U|614
5IMR|1|D|G|615
5IMR|1|D|A|616
5IMR|1|D|G|617
5IMR|1|D|G|618
5IMR|1|D|C|618|||A
5IMR|1|D|G|619
5IMR|1|D|G|620
5IMR|1|D|A|621
5IMR|1|D|G|622
5IMR|1|D|G|623
5IMR|1|D|C|624
5IMR|1|D|G|625
5IMR|1|D|U|626
5IMR|1|D|A|627
5IMR|1|D|G|628
*
5IMR|1|D|C|635
5IMR|1|D|G|636
5IMR|1|D|A|637
5IMR|1|D|G|638
5IMR|1|D|U|639
5IMR|1|D|C|640
5IMR|1|D|C|641
5IMR|1|D|G|642
5IMR|1|D|A|643
5IMR|1|D|A|644
5IMR|1|D|C|645
5IMR|1|D|A|646
5IMR|1|D|G|647
5IMR|1|D|G|648
5IMR|1|D|G|649
5IMR|1|D|C|650
5IMR|1|D|G|651
5IMR|1|D|C|652
5IMR|1|D|A|653
5IMR|1|D|A|654
5IMR|1|D|A|655
5IMR|1|D|G|656

Current chains

Chain D: 23S ribosomal RNA

Nearby chains

Chain c: 50S ribosomal protein L4
Chain h: 50S ribosomal protein L15
Chain x: 50S ribosomal protein L33
Chain z: 50S ribosomal protein L35

IL_5IMR_186